Publications

- Vogiatzis, C. and
__Camur, M.C.__, Identification of essential proteins using induced stars in protein-protein interaction networks, INFORMS Journal on Computing, accepted, (2019).

Preprint available at: https://arxiv.org/pdf/1708.00574.pdf __Faiz, T.__, Vogiatzis, C., and Alam, N., A Column Generation Algorithm for Vehicle Scheduling and Routing Problems, Computers and Industrial Engineering, accepted, (2019).

__Yasui, N.__, Vogiatzis, C., Yoshida, R., and Fukumizu, K., imPhy: Imputing Phylogenetic Trees with Missing Information using Mathematical Programming, IEEE/ACM Transactions on Computational Biology and Bioinformatics, accepted (code available at: https://github.com/yasuiniko/imPhy/).__Suehr, S.__and Vogiatzis, C., Now you see me: Identifying duplicate network personas, European Intelligence and Security Informatics Conference (EISIC) 2018, accepted (2018). Best paper award.__Rasti, S.__and Vogiatzis, C., A survey of computational methods in protein-protein interaction networks, Annals of Operations Research, accepted (2018).__Aslaam, N.__, Vogiatzis, C., Szmerekovsky, J., Biomass feedstock supply chain network design with conversion incentives, Energy Policy, Vol. 116, pp. 39--49 (2018).- Vogiatzis, C. and Walteros, J.L., Integer Programming Models for Detecting Graph Bipartitions with Structural Requirements, Networks, Vol. 71, No. 4, pp. 432--450 (2018).
__Achrekar, O.__and Vogiatzis, C., Evacuation trees with contraflow and divergence considerations, Dynamics of Disasters, accepted (2018).

- Yoshida, R., Fukumizu, K., and Vogiatzis, C., Multilocus Phylogenetic Analysis with Gene Tree Clustering, Annals of Operations Research, accepted (2017).

- Vogiatzis, C. and Pardalos, P.M., Evacuation and betweenness centrality, Dynamics of Disasters, pp. 345--359 (2016).

- Vogiatzis, C., Veremyev, A., Pasiliao, E.L., and Pardalos, P.M., Integer Programming Approaches for Finding the Most and Least Central Cliques, Optimization Letters 9 (4), pp. 615-633 (2015).

- Vogiatzis, C., Pasiliao, E.L., and Pardalos, P.M., Graph partitions for the multidimensional assignment problem, Computational Optimization and Applications 58(1) pp. 205– 224 (2014).
- Walteros, J.L., Vogiatzis, C., Pasiliao, E.L., and Pardalos, P.M., Integer Programming Models for the Multidimensional Assignment Problem with Star Costs, European Journal of Operational Research 235(3), pp. 553–568 (2014).
- Davis, J.R., Paramygin, V.A., Vogiatzis, C., Sheng, Y.P., Pardalos, P.M., and Figueiredo, R.J., Strengthening the resiliency of a coastal transportation system through integrated simulation of storm surge, inundation, and non-recurrent congestion in Northeast Florida, Journal of Marine Science and Engineering 2(2), pp. 287–305 (2014).

- Vogiatzis, C., Yoshida, R., Aviles-Spadoni, I., Imamoto, S.,
and Pardalos, P.M., Evacuation planning for livestock in case of
natural and man-made emergencies, International Journal of Mass
Emergencies and Disasters 31(1), pp. 25–37 (2013).

- Vogiatzis, C. and Pardalos, P.M., Combinatorial Optimization Techniques in Transportation and Logistics Networks, in Handbook of Combinatorial Optimization, Pardalos, Panos M., Du, Ding-Zhu; Graham, Ronald L. (Eds.), Vol. 3, pp. 673–722 (2013).
- Vogiatzis, C., Walteros, J.L., and Pardalos, P.M., Evacuation through clustering techniques, in Models, Algorithms, and Technologies for Network Analysis, pp. 185–198 (2013).

- Davis, J. R., Paramygin, V. A., Figueiredo, R. J., Sheng, Y. P., Vogiatzis, C., and Pardalos, P. M., The Coastal Science Educational Virtual Appliance (CSEVA), Estuarine and Coastal Modeling, Malcolm L. Spaulding ed., ASCE (2012).
- Vogiatzis, C., Sensors in Transportation and Logistics
Networks, in Sensors: Theory, Algorithms, and Applications,
Springer Optimization and Its Applications, 61(3), pp. 145-163
(2012)

- Pardalos, P.M., Vogiatzis, C., and Walteros, J.L., Selected Papers from the Learning and Intelligent Optimization 8 Conference, Special Issue at Annals of Mathematics and Artificial Intelligence (2016).
- Vogiatzis, C., Walteros, J.L., and Pardalos, P.M., Dynamics of Information Systems: Computational and Mathematical Challenges, Springer (edited).
- Pardalos, P.M., Resende, M.G.C., Vogiatzis, C., and Walteros,
J.L., Learning and Intelligent Optimization 8, Lecture Notes in
Computer Science, Springer (edited).

__Rahim-Taleqani, A.__, Hough, J., and Vogiatzis, C., Maximum Closeness Centrality k-clubs: A Study of Dock-less Bike Sharing, submitted, January 2019.__Forouzandeh Shahraki, A.__, Yadav, O.P., Vogiatzis, C., Selective Maintenance Optimization for Multi-state Systems Considering Stochastically Dependent Components and Stochastic Imperfect Maintenance Actions, submitted, under 2nd round of reviews, June 2018.__Aslaam, N. M.__, Szmerekovsky, J., and Vogiatzis, C., Plant capacity level and location as a mechanism for sustainability in biomass supply chain, submitted, January 2019.__Rasti, S.__, Vogiatzis, C., Novel group centrality metrics for detecting essentiality in protein-protein interaction networks, in preparation.__Sarowar, M.__, Vogiatzis, C., and Alam, N., Primal Dual Interior Point Methods for Type-2 Second Order Cone Optimization, in preparation.